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Spectral prediction features as a solution for the search space size problem in proteogenomics
Proteogenomics approaches often struggle with the distinction between true and false peptide-to-spectrum matches as the database size …
Steven Verbruggen
,
Siegfried Gessulat
,
Ralf Gabriels
,
Anna Matsaroki
,
Hendrik Van de Voorde
,
Bernhard Kuster
,
Sven Degroeve
,
Lennart Martens
,
Wim Van Criekinge
,
Mathias Wilhelm
,
Gerben Menschaert
DOI
Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients
Rising population density and global mobility are among the reasons why pathogens such as SARS-CoV-2, the virus that causes COVID-19, …
Bart Van Puyvelde
,
Katleen Van Uytfanghe
,
Olivier Tytgat
,
Laurence Van Oudenhove
,
Ralf Gabriels
,
Robbin Bouwmeester
,
Simon Daled
,
Tim Van Den Bossche
,
Pathmanaban Ramasamy
,
Sigrid Verhelst
,
Laura De Clerck
,
Laura Corveleyn
,
Sander Willems
,
Nathan Debunne
,
Evelien Wynendaele
,
Bart De Spiegeleer
,
Peter Judak
,
Kris Roels
,
Laurie De Wilde
,
Peter Van Eenoo
,
Tim Reyns
,
Marc Cherlet
,
Emmie Dumont
,
Griet Debyser
,
Ruben t’Kindt
,
Koen Sandra
,
Surya Gupta
,
Nicolas Drouin
,
Amy Harms
,
Thomas Hankemeier
,
Donald JL Jones
,
Pankaj Gupta
,
Dan Lane
,
Catherine S Lane
,
Said El Ouadi
,
Jean-Baptiste Vincendet
,
Nick Morrice
,
Stuart Oehrle
,
Nikunj Tanna
,
Steve Silvester
,
Sally Hannam
,
Florian C Sigloch
,
Andrea Bhangu-Uhlmann
,
Jan Claereboudt
,
N Leigh Anderson
,
Morteza Razavi
,
Sven Degroeve
,
Lize Cuypers
,
Christophe Stove
,
Katrien Lagrou
,
Geert A Martens
,
Dieter Deforce
,
Lennart Martens
,
Johannes PC Vissers
,
Maarten Dhaenens
DOI
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
The 2020 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers’ meeting was held from January 13th to January …
Christopher Ashwood
,
Wout Bittremieux
,
Eric W Deutsch
,
Nadezhda T Doncheva
,
Viktoria Dorfer
,
Ralf Gabriels
,
Vladimir Gorshkov
,
Surya Gupta
,
Andrew R Jones
,
Lukas Käll
,
Dominik Kopczynski
,
Lydie Lane
,
Ludwig Lautenbacher
,
Marc Legeay
,
Marie Locard-Paulet
,
Bart Mesuere
,
Yasset Perez-Riverol
,
Eugen Netz
,
Julianus Pfeuffer
,
Timo Sachsenberg
,
Renee Salz
,
Patroklos Samaras
,
Henning Schiebenhoefer
,
Tobias Schmidt
,
Veit Schwämmle
,
Alessio Soggiu
,
Julian Uszkoreit
,
Tim Van Den Bossche
,
Bart Van Puyvelde
,
Joeri Van Strien
,
Pieter Verschaffelt
,
Henry Webel
,
Sander Willems
DOI
The Age of Data-Driven Proteomics: How Machine Learning Enables Novel Workflows
A lot of energy in the field of proteomics is dedicated to the application of challenging experimental workflows, which include …
Robbin Bouwmeester
,
Ralf Gabriels
,
Tim Van Den Bossche
,
Lennart Martens
,
Sven Degroeve
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DOI
Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries
Abstract Data-independent acquisition (DIA) generates comprehensive yet complex mass spectrometric data, which imposes the use of …
Bart Van Puyvelde
,
Sander Willems
,
Ralf Gabriels
,
Simon Daled
,
Laura De Clerck
,
Sofie Vande Casteele
,
An Staes
,
Francis Impens
,
Dieter Deforce
,
Lennart Martens
,
Sven Degroeve
,
Maarten Dhaenens
PDF
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Code
Project
DOI
Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques
MS²PIP is a data-driven tool that accurately predicts peak intensities for a given peptide’s fragmentation mass spectrum. Since …
Ralf Gabriels
,
Lennart Martens
,
Sven Degroeve
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Code
Project
DOI
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